{ "_id": "6a1029b4acfb0bcc41c9197d", "Package": "isobxr", "Type": "Package", "Title": "Stable Isotope Box Modelling in R", "Version": "2.0.0.9000", "Authors@R": "person(\"Theo\", \"Tacail\", email = \"theo.tacail@protonmail.com\", role = c(\"aut\", \"cre\"))", "Description": "A set of functions to run simple and composite box-models\nto describe the dynamic or static distribution of stable\nisotopes in open or closed systems. The package also allows the\nsweeping of many parameters in both static and dynamic\nconditions. The mathematical models used in this package are\nderived from Albarede, 1995, Introduction to Geochemical\nModelling, Cambridge University Press, Cambridge\n.", "License": "GPL-3", "URL": "https://github.com/ttacail/isobxr,\nhttps://ttacail.github.io/isobxr_web/,\nhttps://ttacail.github.io/isobxr/", "BugReports": "https://github.com/ttacail/isobxr/issues", "Encoding": "UTF-8", "RoxygenNote": "7.2.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libjpeg-dev\nlibpng-dev libuv1-dev libxml2-dev zlib1g-dev", "Repository": "https://ttacail.r-universe.dev", "Date/Publication": "2024-05-06 17:12:01 UTC", "RemoteUrl": "https://github.com/ttacail/isobxr", "RemoteRef": "HEAD", "RemoteSha": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "RemoteSubdir": "isobxr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-13 07:28:41 UTC", "User": "root" }, "Author": "Theo Tacail [aut, cre]", "Maintainer": "Theo Tacail ", "MD5sum": "230c5811f411f41e4acc89a9b3fa8415", "_user": "ttacail", "_type": "src", "_file": "isobxr_2.0.0.9000.tar.gz", "_fileid": "c8f32f3de5c4d4fec71f3ee97305445c33bd0a71cf8c7bc546fcc8f9b363e163", "_filesize": 326570, "_sha256": "c8f32f3de5c4d4fec71f3ee97305445c33bd0a71cf8c7bc546fcc8f9b363e163", "_created": "2026-05-13T07:28:41.000Z", "_published": "2026-05-22T10:02:28.106Z", "_distro": "noble", "_jobs": [ { "job": 77357792666, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "6964111867" }, { "job": 77357792697, "time": 162, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "6964107450" }, { "job": 77357792591, "time": 165, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "6964101752" }, { "job": 77357792700, "time": 145, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "6964096949" }, { "job": 77357792153, "time": 202, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6964059833" }, { "job": 77357791974, "time": 145, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7157880949" }, { "job": 77357792623, "time": 116, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "6964094112" }, { "job": 77357792928, "time": 109, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "6964091820" }, { "job": 77357792714, "time": 114, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "6964092998" } ], "_buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ttacail/isobxr", "_commit": { "id": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "author": "Theo Tacail ", "committer": "Theo Tacail ", "message": "fix issue with selection of finite boxes res times\n", "time": 1715015521 }, "_maintainer": { "name": "Theo Tacail", "email": "theo.tacail@protonmail.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "stringr", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "deSolve", "role": "Imports" }, { "package": "rlang", "version": ">= 0.4.11", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggrepel", "role": "Imports" }, { "package": "qgraph", "role": "Imports" }, { "package": "writexl", "role": "Imports" }, { "package": "R.utils", "role": "Imports" }, { "package": "fs", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "tictoc", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "tidyselect", "role": "Suggests" }, { "package": "grDevices", "role": "Suggests" } ], "_owner": "ttacail", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "ttacail", "count": 391, "uuid": 15157151 } ], "_userbio": { "uuid": 15157151, "type": "user", "name": "Theo Tacail", "description": "Stable isotope biogeochemist working \r\nwith mammals and humans, into isotope box modelling" }, "_downloads": { "count": 210, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/isobxr" }, "_devurl": "https://github.com/ttacail/isobxr", "_pkgdown": "https://ttacail.github.io/isobxr/", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/isobxr.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ttacail/isobxr", "_realowner": "ttacail", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2021-09-02" }, { "version": "1.0.1", "date": "2021-09-07" }, { "version": "2.0.0", "date": "2023-08-24" } ], "_exports": [ "fit.final_space", "merge_FINnD_chunks", "plot_dyn_2D", "plot_relaxation", "plot_scenario", "plot_single_run", "read.dyn_2D_master", "read.final_nD_master", "read.isobxr_master", "read.scenario_master", "sim.scenario", "sim.single_run", "solve_analytically", "solve_numerically", "sweep.dyn_2D", "sweep.final_nD" ], "_help": [ { "page": "fit.final_space", "title": "Fit n parameters to observations", "topics": [ "fit.final_space" ] }, { "page": "merge_FINnD_chunks", "title": "Merge results from all chunks of a given sweep.final_nD run", "topics": [ "merge_FINnD_chunks" ] }, { "page": "plot_dyn_2D", "title": "plot sweep.dyn_2D outputs", "topics": [ "plot_dyn_2D" ] }, { "page": "plot_relaxation", "title": "plot relaxation", "topics": [ "plot_relaxation" ] }, { "page": "plot_scenario", "title": "plot sim.scenario outputs", "topics": [ "plot_scenario" ] }, { "page": "plot_single_run", "title": "plot sim.single_run outputs", "topics": [ "plot_single_run" ] }, { "page": "read.dyn_2D_master", "title": "Read and inspect sweep.dyn_2D master files", "topics": [ "read.dyn_2D_master" ] }, { "page": "read.final_nD_master", "title": "Read and inspect sweep.final_nD master files", "topics": [ "read.final_nD_master" ] }, { "page": "read.isobxr_master", "title": "Read and inspect isobxr master files", "topics": [ "read.isobxr_master" ] }, { "page": "read.scenario_master", "title": "Read and inspect scenario master files", "topics": [ "read.scenario_master" ] }, { "page": "sim.scenario", "title": "Simulate a scenario", "topics": [ "sim.scenario" ] }, { "page": "sim.single_run", "title": "Run a single isotope box-model simulation", "topics": [ "sim.single_run" ] }, { "page": "solve_analytically", "title": "Analytically solve stable isotope box models", "topics": [ "solve_analytically" ] }, { "page": "solve_numerically", "title": "Numerically solve stable isotope box models", "topics": [ "solve_numerically" ] }, { "page": "sweep.dyn_2D", "title": "Sweep the space of two parameters during the response to a perturbation", "topics": [ "sweep.dyn_2D" ] }, { "page": "sweep.final_nD", "title": "Sweep the space of n parameters at the final state of a system", "topics": [ "sweep.final_nD" ] } ], "_readme": "https://github.com/ttacail/isobxr/raw/HEAD/isobxr/README.md", "_rundeps": [ "abind", "backports", "base64enc", "bslib", "cachem", "cellranger", "checkmate", "cli", "cluster", "colorspace", "corpcor", "cpp11", "crayon", "data.table", "deSolve", "digest", "dplyr", "evaluate", "farver", "fastmap", "fdrtool", "fontawesome", "foreign", "Formula", "fs", "generics", "ggplot2", "ggrepel", "glasso", "glue", "GPArotation", "gridExtra", "gtable", "gtools", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "igraph", "isoband", "jpeg", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lavaan", "lifecycle", "magrittr", "MASS", "Matrix", "memoise", "mime", "mnormt", "nlme", "nnet", "numDeriv", "pbapply", "pbivnorm", "pillar", "pkgconfig", "plyr", "png", "prettyunits", "progress", "psych", "purrr", "qgraph", "quadprog", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "RColorBrewer", "Rcpp", "readxl", "rematch", "reshape2", "rlang", "rmarkdown", "rpart", "rstudioapi", "S7", "sass", "scales", "stringi", "stringr", "tibble", "tictoc", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "writexl", "xfun", "yaml" ], "_vignettes": [ { "source": "vgn_01_Installation.Rmd", "filename": "vgn_01_Installation.html", "title": "1 - Install isobxr", "author": "Théo Tacail", "engine": "knitr::rmarkdown", "headings": [ "Installation", "Released version", "Development version", "Load isobxr", "Download templates and tutorials" ], "created": "2021-04-15 14:06:10", "modified": "2023-08-22 14:05:11", "commits": 10 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "isobxr", "_universes": [ "ttacail" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.0.9000", "date": "2026-05-13T07:31:29.000Z", "distro": "noble", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "beb2b8099fec887c054e4afc46bdf9376c3c4347a14d5a84361170df2688aeb0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" }, { "r": "4.6.0", "os": "linux", "version": "2.0.0.9000", "date": "2026-05-13T07:31:15.000Z", "distro": "noble", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "e41080c8459988f209a08702860edb514f0e09bff063c20f8380d9da992fe8b6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" }, { "r": "4.5.3", "os": "mac", "version": "2.0.0.9000", "date": "2026-05-13T07:31:05.000Z", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "acf5383ba41956a3bb259ad9671717d11a2754d655acd0d46255468f2a4f3075", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" }, { "r": "4.6.0", "os": "mac", "version": "2.0.0.9000", "date": "2026-05-13T07:30:46.000Z", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "6a4aa3010768071e11ef3763fd1e4e266e0ce1859a748abe4426d0bf35ab4fa2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" }, { "r": "4.7.0", "os": "win", "version": "2.0.0.9000", "date": "2026-05-13T07:30:22.000Z", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "c1417d5ddc1574bf38ca8363367af5aef20c1bc61ca859119839db75584f4662", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" }, { "r": "4.5.3", "os": "win", "version": "2.0.0.9000", "date": "2026-05-13T07:30:15.000Z", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "c1c4b81bbae520512019df38ac903bb24e991d3b43369eaaf0e81a1cf8cb331f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" }, { "r": "4.6.0", "os": "win", "version": "2.0.0.9000", "date": "2026-05-13T07:30:14.000Z", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "b60ee61bbcda2e91b21cf45030317e0a6f785481be2ee6691d14da208388a1e2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.0.9000", "date": "2026-05-22T10:02:10.000Z", "commit": "dc1a48031a19d52b50ab6e167ad352fbbff350bc", "fileid": "af876a10944de7d83bd830692fe3602af4746439e35279dc27ee043db36b903a", "status": "success", "buildurl": "https://github.com/r-universe/ttacail/actions/runs/25784744823" } ] }