Package: isobxr 2.1.0

isobxr: Stable Isotope Box Modelling in R

A set of functions to run simple and composite box-models to describe the dynamic or static distribution of stable isotopes in open or closed systems. The package also allows the sweeping of many parameters in both static and dynamic conditions. The mathematical models used in this package are derived from Albarede, 1995, Introduction to Geochemical Modelling, Cambridge University Press, Cambridge <doi:10.1017/CBO9780511622960>.

Authors:Theo Tacail [aut, cre]

isobxr_2.1.0.tar.gz
isobxr_2.1.0.zip(r-4.7-any)isobxr_2.1.0.zip(r-4.6-any)isobxr_2.1.0.zip(r-4.5-any)
isobxr_2.1.0.tgz(r-4.6-any)isobxr_2.1.0.tgz(r-4.5-any)
isobxr_2.1.0.tar.gz(r-4.7-any)isobxr_2.1.0.tar.gz(r-4.6-any)
isobxr_2.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
isobxr/json (API)

# Install 'isobxr' in R:

install.packages('isobxr', repos = c('https://ttacail.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ttacail/isobxr/issues

Pkgdown/docs site:https://ttacail.github.io

On CRAN:

4.18 score 1 stars 4 scripts 331 downloads 16 exports 104 dependencies

Last updated from:7b8b271258. Checks:2 NOTE, 7 OK. Indexed: yes.

Target	Result	Time
linux-devel	NOTE	203
source / vignettes	OK	220
linux-release	OK	188
macos-release	OK	117
macos-oldrel	OK	97
windows-devel	NOTE	75
windows-release	OK	87
windows-oldrel	OK	89
wasm-release	OK	150

Exports:fit.final_space merge_FINnD_chunks plot_dyn_2D plot_relaxation plot_scenario plot_single_run read.dyn_2D_master read.final_nD_master read.isobxr_master read.scenario_master sim.scenario sim.single_run solve_analytically solve_numerically sweep.dyn_2D sweep.final_nD

Dependencies:abind backports base64enc bslib cachem cellranger checkmate cli cluster colorspace corpcor cpp11 crayon data.table deSolve digest dplyr evaluate farver fastmap fdrtool fontawesome foreign Formula fs generics ggplot2 ggrepel glasso glue GPArotation gridExtra gtable gtools highr Hmisc hms htmlTable htmltools htmlwidgets igraph isoband jpeg jquerylib jsonlite knitr labeling lattice lavaan lifecycle lubridate magrittr MASS Matrix memoise mime mnormt nlme nnet numDeriv pbapply pbivnorm pillar pkgconfig plyr png prettyunits progress psych purrr qgraph quadprog R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp readxl rematch reshape2 rlang rmarkdown rpart rstudioapi S7 sass scales stringi stringr tibble tictoc tidyr tidyselect timechange tinytex utf8 vctrs viridisLite withr writexl xfun yaml

1 - Install isobxr

Installation | Released version | Development version | Load isobxr | Download templates and tutorials

Rendered fromvgn_01_Installation.Rmdusingknitr::rmarkdown

Last update: 2023-08-22
Started: 2021-04-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Fit n parameters to observations	fit.final_space
Merge results from all chunks of a given sweep.final_nD run	merge_FINnD_chunks
plot sweep.dyn_2D outputs	plot_dyn_2D
plot relaxation	plot_relaxation
plot sim.scenario outputs	plot_scenario
plot sim.single_run outputs	plot_single_run
Read and inspect sweep.dyn_2D master files	read.dyn_2D_master
Read and inspect sweep.final_nD master files	read.final_nD_master
Read and inspect isobxr master files	read.isobxr_master
Read and inspect scenario master files	read.scenario_master
Simulate a scenario	sim.scenario
Run a single isotope box-model simulation	sim.single_run
Analytically solve stable isotope box models	solve_analytically
Numerically solve stable isotope box models	solve_numerically
Sweep the space of two parameters during the response to a perturbation	sweep.dyn_2D
Sweep the space of n parameters at the final state of a system	sweep.final_nD