Package: isobxr 2.0.0.9000
Theo Tacail
isobxr: Stable Isotope Box Modelling in R
A set of functions to run simple and composite box-models to describe the dynamic or static distribution of stable isotopes in open or closed systems. The package also allows the sweeping of many parameters in both static and dynamic conditions. The mathematical models used in this package are derived from Albarede, 1995, Introduction to Geochemical Modelling, Cambridge University Press, Cambridge <doi:10.1017/CBO9780511622960>.
Authors:
isobxr_2.0.0.9000.tar.gz
isobxr_2.0.0.9000.zip(r-4.5)isobxr_2.0.0.9000.zip(r-4.4)isobxr_2.0.0.9000.zip(r-4.3)
isobxr_2.0.0.9000.tgz(r-4.4-any)isobxr_2.0.0.9000.tgz(r-4.3-any)
isobxr_2.0.0.9000.tar.gz(r-4.5-noble)isobxr_2.0.0.9000.tar.gz(r-4.4-noble)
isobxr_2.0.0.9000.tgz(r-4.4-emscripten)isobxr_2.0.0.9000.tgz(r-4.3-emscripten)
isobxr.pdf |isobxr.html✨
isobxr/json (API)
NEWS
| # Install 'isobxr' in R: |
| install.packages('isobxr', repos = c('https://ttacail.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ttacail/isobxr/issues
Last updated 5 months agofrom:dc1a48031a. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 03 2024 |
| R-4.5-win | WARNING | Sep 03 2024 |
| R-4.5-linux | WARNING | Sep 03 2024 |
| R-4.4-win | WARNING | Sep 03 2024 |
| R-4.4-mac | WARNING | Sep 03 2024 |
| R-4.3-win | WARNING | Sep 03 2024 |
| R-4.3-mac | WARNING | Sep 03 2024 |
Exports:fit.final_spacemerge_FINnD_chunksplot_dyn_2Dplot_relaxationplot_scenarioplot_single_runread.dyn_2D_masterread.final_nD_masterread.isobxr_masterread.scenario_mastersim.scenariosim.single_runsolve_analyticallysolve_numericallysweep.dyn_2Dsweep.final_nD
Dependencies:abindbackportsbase64encbslibcachemcellrangercheckmatecliclustercolorspacecorpcorcpp11crayondata.tabledeSolvedigestdplyrevaluatefansifarverfastmapfdrtoolfontawesomeforeignFormulafsgenericsggplot2ggrepelglassoglueGPArotationgridExtragtablegtoolshighrHmischmshtmlTablehtmltoolshtmlwidgetsigraphisobandjpegjquerylibjsonliteknitrlabelinglatticelavaanlifecyclemagrittrMASSMatrixmemoisemgcvmimemnormtmunsellnlmennetnumDerivpbapplypbivnormpillarpkgconfigplyrpngprettyunitsprogresspsychpurrrqgraphquadprogR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppreadxlrematchreshape2rlangrmarkdownrpartrstudioapisassscalesstringistringrtibbletictoctidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrwritexlxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fit n parameters to observations | fit.final_space |
| Merge results from all chunks of a given sweep.final_nD run | merge_FINnD_chunks |
| plot sweep.dyn_2D outputs | plot_dyn_2D |
| plot relaxation | plot_relaxation |
| plot sim.scenario outputs | plot_scenario |
| plot sim.single_run outputs | plot_single_run |
| Read and inspect sweep.dyn_2D master files | read.dyn_2D_master |
| Read and inspect sweep.final_nD master files | read.final_nD_master |
| Read and inspect isobxr master files | read.isobxr_master |
| Read and inspect scenario master files | read.scenario_master |
| Simulate a scenario | sim.scenario |
| Run a single isotope box-model simulation | sim.single_run |
| Analytically solve stable isotope box models | solve_analytically |
| Numerically solve stable isotope box models | solve_numerically |
| Sweep the space of two parameters during the response to a perturbation | sweep.dyn_2D |
| Sweep the space of n parameters at the final state of a system | sweep.final_nD |